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PUBLICATIONS RECENTES

LISTE DE TOUTES LES PUBLICATIONS (pdf)

GOOGLE SCHOLAR

2021

Saleh D, Chen J, Leplé JC, Leroy T, Truffaut L,  Dencausse B, Lalanne C, Labadie K, Lesur I, Bert B, Lagane F, Morneau F, Aury JM, Plomion C, Lascoux M, Kremer A 2021. Genome-wide evolutionary response of European oaks since the Little Ice Age. BioRxiv  (pdf)

Kremer A 2021. Evolution in action : rapid genetic and demographic changes in Q.petraea and Q.robur. International Oaks 32: 25-34

Caignard T, Kremer A, Bouteiller X, Parmentier J, Louvet JM, Venner S, Delzon S  2021. Counter gradient variation of reproductive effort in a widely distributed temperate oak (Quercus petraea). Functional Ecology (pdf)

Kremer A, Plomion C, Leroy T., Alexandre H, Truffaut L, Delzon S, Ducousso A, Musch B, Torres-Ruiz JM, Wagner S, 2020. Evolution passée et contemporaine des chênes. Revue Forestière Française 73, 4 : 297-317 (pdf)

Lang T, Abadie P, Léger V, Decourcelle T, Frigerio JM, Burban C, Bodenes C, Guichoux E, Le Provost G, Robin C, Tani N, Léger L, Lepoittevin C, El Mujtar V, Hubert F, Tibbits J, Paiva J, Franc A, Raspail F, Mariette S, Marie-Pierre Reviron MP, Plomion C., Kremer A, Desprez-Loustau M.L.Garnier-Gere P 2021. High-quality SNPs from genic regions highlight introgression patterns among European white oaks (Quercus petraea and Q. robur).  BioRxiv (pdf)  PCI in Forest and Wood Science  (pdf)

 

2020

Klápště J, Kremer A, Burg K,  Garnier-Géré P,  Gamal El-Dien O, Ratcliffe B,  El-Kassaby Y, Porth I 2020. Quercus species divergence is driven by natural selection on evolutionary less integrated traits. Heredity (pdf)

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Alexandre H, Truffaut L, Klein E, Ducousso A, Chancerel E, Lesur I, Dencausse B, Louvet JM, Gérard Nepveu G, Torres‐Ruiz JM, Lagane F, Musch B, Delzon S, Kremer A 2020. How does contemporary selection shape oak phenotypes ? Evolutionary Applications  (pdf)

 

Kremer A, Hipp AL 2020. Oaks : an evolutionary success story. New Phytologist 226 : 987-1011 (pdf)

Alexandre H, Truffaut L, Ducousso A, Louvet JM, Nepveu G, Torres-Ruiz JM, Lagane F, Firmat C, Musch B, Delzon S, Kremer A 2020. In situ estimation of genetic variation of functional and ecological traits in Q. petraea and Q.robur. Tree Genetics & Genomes 16 : 32  (pdf)

Leroy T, Louvet JM, Lalanne C, Le Provost G, Labadie K, Aury JM, Delzon S, Plomion C, Kremer A 2020. Adaptive introgression as a driver of local adaptation to climate in European white oaks. New Phytologist 226 : 1171-1182  (pdf)

Hipp AL, Manos PS, Hahn M, Avishai M, Bodénès C, Cavender-Bares J, Crowl A, Deng M, Denk T, Gailing O, González-Elizondo MS, González-Rodríguez A, Grimm G, Jiang XL, Kremer A, Lesur I, McVay J, Plomion C, Rodríguez-Correa , Schulze ED, Simeone MC, Sork V, Valencia AS 2020. The genomic landscape of the global oak phylogeny. New  Phytologist 226 : 1198-1212 (pdf)

Leroy T, Rougemont Q, Dupouey JL, Bodénès C, Lalanne C, Belser C, Labadie K, Le Provost G, Aury JM, Kremer A, Plomion C 2020. Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers. New Phytologist 226 : 1183-1197 (pdf).

Leroy T, Plomion C, Kremer A 2020. Oak tree symbolism in the light of genomics. New Phytologist 226 :1012-1017 (pdf)

2019

Fréjaville T, Vizcaino-Palomar N, Fady B, Kremer A, Benito-Garzon M 2019 Range margin populations show higher climate adaptation lags in European trees. Global Change Biology (doi:10.1111/gcb.14881) (pdf)

Torres-Ruiz JM, Kremer A, Carins-Murphy MR, Brodribb TJ, Lamarque LJ, Truffaut L, Bonne F, Ducousso A, Delzon S. 2019. Genetic differentiation in functional traits among European sessile oak populations. Tree Physiology 39 : 1736-1749  (pdf) 

Fréjaville T, Fady B, Kremer A, Ducousso A, Benito-Garzon M 2019. Inferring phenotypic plasticity and local adaptation to climate across tree species ranges using foerest inventory data. Global Ecology and Biogeography 28 : 1259-1271 (pdf)

Pont C, Wagner S, Kremer A, Orlando L, Plomion C, Salse J 2019. Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA. Genome Biology 20: 29 (pdf)

Caignard T, Delzon S, Bodénès C, Dencausse B, Kremer A 2019. Heritability and genetic architecture of reproduction-related traits in a temperate oak species. Tree Genetics & Genomes 15, 1 (pdf)

Sáenz-Romero C, Kremer A, Nagy L, Újvari-Jármay E, Ducousso A, Kóczán-Horváth A, Kehlet Hansen J, Mátyás C 2019. Common garden comparisons confirm inherited differences in sensitivity to climate change between forest tree species. PeerJ 7: e6213  (pdf)

Albarran-Lara AL, Petit RJ, Kremer A, Caron H, Peñalozza-Ramírez, Gugger PF, Dávila-Aranda PD, Oyama K 2019. Low genetic differentiation  between two morphologically and ecologically distinct ginat-leaved Mexican oaks. Plant Systematics and Evolution, 305:89-101 (pdf)

Soularue JP, Thöni A, Arnoux L, Le Corre V, Kremer A 2019. Metapop : An individual-based model for simulating the evolution of tree populations in spatially and temporally heterogeneous landscapes. Molecular Ecology Resources 19: 296-305 (pdf)

2018

Tuskan GA, Groover AT, Schmutz J, DiFazio SP, Myburg A, Grattapaglia D, Smart LB, Yin T, Aury JM, Kremer A, Leroy T, LeProvost G, Plomion C, Carlson JE, Randall J, Westbrook J, Grimwood J, Muchero W, Jacobson D, Michener JK 2018. Hardwood tree genomics: Unlocking woody plnat biology. Frontiers in Plant Sciences 9: 1799  (pdf)

Cannon CH, Brendel O, Deng M, Hipp AL, Kremer A, Kua CS, Plomion C, Romero Severson J, Sork VL 2018.Gaining a global perspective on Fagaceae genomic diversification and adaptation. New Phytologist 218: 894-897 (pdf)

Kremer A, Caignard C, Deuffic P, Garzon MB, Orazio C, Porté AJ, Robin C, Sergent A 2018. Nouvelles forêts et nouvelles attentes. In « Anticiper les changements climatiques en Nouvelle Aquitaine » H. Le Treut ed., Editions Région Nouvelle Aquitaine, 225-246 

Lesur I, Alexandre, H, Boury C, Chancerel E, Plomion C, Kremer A 2018. Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand. Frontiers in Plant Science.9: 996 (pdf)

Lobo A,Torres-Ruiz J.M. , Burlett R, Lemaire C, Parise C, Francioni C, Truffaut L, Tomášková I, Hansen J.K, Kjær E.D, Kremer A and Delzon S. 2018 Assessing inter- and intraspecific variability of xylem vulnerability to embolism in oaks. Forest Ecology and Management 424: 53-61 (pdf)

Plomion C,  Aury JM,  Amselem J,  Leroy T, Murat F,  Duplessis S,  Faye S, Francillonne N, Labadie K, Le Provost G,  Lesur I,  Bartholomé J,  Faivre-Rampant P,  Kohler A,  Leplé JC,  Chantret N,  Chen J,   Diévart A,  Alaeitabar T,  Barbe V,  Belser C,  Bergès H,  Bodénès C,  Bogeat-Triboulot MB,  Bouffaud ML,  Brachi B,  Chancerel E,  Cohen D,  Couloux A,  Da Silva C,  Dossat C,  Ehrenmann F,  Gaspin C,  Grima-Pettenati J,  Guichoux E,  Hecker A, Herrmann S, Hugueney P,  Hummel I, Klopp C, Lalanne C,  Lascoux M, Lasserre E,  Lemainque A,  Desprez-Loustau ML,  Luyten I,  Madoui MA, Mangenot S,  Marchal C,  Maumus F,  Mercier J,  Michotey C,  Panaud O, Picault N, Rouhier N, Rué N,  Rustenholz C,  Salin F,  Soler M,  Tarkka M, Velt A,  Zanne AE, Martin F,  Wincker P, Quesneville H,  Kremer A,  Salse J 2018.  Oak genome reveals facets of long lifespan. Nature Plants 4:440-452 (pdf

Leroy T, Rougemont Q, Bodenes C, Lalanne C, Belser C, Labadie K, Le Provost G, Aury JM, Kremer A, Plomion C 2018 Secondary contacts between European white oaks reveal genes underlying reproductive isolation.  bioRxiv 246637 (pdf)

Wagner S, Lagane F, Seguin-Orlando A, Schubert M,  Leroy T, Guichoux E, Chancerel E,Bech-Hebelstrup, Bernard V, Billard C, Billaud Y,  Bolliger M, Croutsch C, Čufar K, Eynaud F, Heussner KU, Koninger J, Langenegger F, Leroy F, Lima C, Martinelli N, Momber G, Billamboz A,  Nelle O, Palomo A, Pique R, Ramstein M,  Schweichel R, Stauble H, Tegel W, Terradas X, Verdin F, Plomion C, Kremer A, Orlando L 2018 High-Throughput DNA sequencing of ancient wood. Molecular Ecology 27: 1138-1154 (pdf)

Lowe JL, Breed MF, Caron H, Colpaert N, Dick C, Finegan B, Gardner M, Gheysen G, Gribel R, Berton J,  Harris C, Kremer A, Lemes MR, Margis R, Navarro CM, Salgueiro F, Villalobos-Barrantes HM, Cavers S 2018 Standardised genetic diversity-life history correlates for improved genetic resource management of Neotropical trees.  Diversity and distributions 24 : 730-741 (pdf)

Arbez A. Carnus JC, Kremer A. (éditeurs) 2018. Forêts d’hier et de demain. 50 ans de recherches en Aquitaine. Presses Universitaires de Bordeaux, LGPA Editions, 250p (pdf)

2017

Yousefpour R, Temperli C, Jacobsen JB, Thorsen BJ, Meilby H, Lexer MJ, Lindner M, Bugmann H, Borges JG, Palma JHN, Ray D, Zimmermann NE, Delzon S, Kremer A, Kramer K, Reyer CPO, Lasch-Born P, Garcia-Gonzalo J, Hanewinkel M 2017. A framework for modeling adaptive forest management and decision making under climate change. Ecology and Society 22(4):40. (pdf)  https://doi.org/10.5751/ES-09614-220440

Merceron RN, De Langhe A, Dubois H, Garin O, Gerarts F, Jacquemin F, Balligand B, Otjacques M, Sabbe T, Servranckx M, Wautelet S, Kremer A, Porté AJ, Monty A 2017. Removal of acorns of the alien Quercus rubra on the ground by scatter-hoarding animals in Belgian forests. Biotechnol.Agron.Soc.Environ. 21 (2) (pdf)

Firmat C, Delzon S, Louvet JM, Parmentier J, Kremer A. 2017. Evolutionary dynamics of the leaf phenological cycle in an oak metapopulation along an elevation gradient. Journal of evolutionary biology 30: 2116-2131  (pdf)

Caignard T, Kremer A, Firmat C, Nicolas M, Venner S, Delzon S 2017 Increasing spring temperatures favor oak seed production in temperate areas. Scientific Reports 7: 8555 (pdf)

Merceron NR, Leroy T, Chancerel E, Romero-Severson J, Ducousso A, Monty A, Porté AJ, Kremer A.  2017. From North America to Europe: deciphering the introduction history of Quercus rubra. Genome 60: 778-790 (pdf)

Merceron RN, De Langhe A, Dubois H, Garin O, Gerarts F, Jacquemin F, Balligand B, Otjacques M, Sabbe T, Servranckx M, Wautelet S, Kremer A, Porté AJ, Monty A 2017. Removal of acorns of the alien Quercus rubra on the ground by scatter-hoarding animals in Belgian forests. Biotechnol.Agron.Soc.Environ. 21 (2) (pdf)

Truffaut L, Chancerel E, Ducousso A, Dupouey JL, Badeau V, Ehrenmann F, Kremer A. 2017. Fine scale species distribution changes in a mixed oak stand over two successive generations.  New Phytologist  215: 126-139 (pdf)

Leroy T, Roux C, Villate L, Bodénès C, Romiguier J, Paiva JAP, Dossat C, Aury JM, Plomion C, Kremer A. 2017. Extensive recent secondary contacts between four European white oak species. New Phytologist  214: 865-878 (pdf)

Sáenz-Romero C, Lamy JB, Ducousso A, Musch B, Ehrenmann F, Delzon S, Chałupka W,  Daḡdas S, Hansen JK, Lee SL, Liesebach M, Rau HM, Psomas A, Schneck V, Steiner W, Zimmermann NE, Kremer A. 2017  Adaptive and plastic population response of Quercus petraea across Europe. Global Change Biology 23: 2831-2847 (pdf)

Song J, Brendel O, Bodenès C, Plomion C, Kremer A, Colin F  2017  X-ray computed tomography to decipher the genetic architecture of tree branching traits: oak as a case study. Trees Genetics & Genomes  13:5 (pdf)

2016

Rellstab C, Zoller S, Walthert L, Lesur I, Bodénès C, Pluess AR, Sperisen C, Kremer A, Gugerli F 2016 Signatures of local adaptation in candidate genes of oaks (Quercus spp.) in respect to present and future climatic conditions. Molecular Ecology  25: 5907-5924 (pdf)

Kremer A 2016 Microevolution of European temperate oaks in response to environmental changes. Compte rendus Biologies 339: 263-267 (pdf)

Porth I, Garnier-Géré P, Klapste J, Scotti-Saintagne C, El-Kassaby Y, Burg K, Kremer A 2016 Species-specific alleles at a β-tubulin gene show significant associations with leaf morphological variation within Quercus petraea and Q. robur populations. Trees Genetics & Genomes 12: 81  (pdf)

Bodénès C, Chancerel E, Ehrenmann F, Kremer A, Plomion C 2016 High density linkage mapping and distribution of segregation distorsion regions in oak genome.  DNA Research 23: 115-124 (pdf)

Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V,  Belser C,  Berges H, Bodénès C, Boudet N, Boury C, Canaguier A,  Couloux A, Da Silva C, Duplessis S, Ehrenmann F, Estrada-Mairey B,  Fouteau S,  Francillonne N, Gaspin C,  Guichard C,  Klopp C, Labadie K, Lalanne C,  Le Clainche I,  Leplé JC, Le Provost G,  Leroy T,  Lesur I,  Martin F, Mercier J, Michotey C, Murat F,  Salin F,  Steinbach D, Faivre-Rampant P, Wincker P,  Salse J, Quesneville H,  Kremer A 2016 Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources 16: 254-265 (pdf)

Sinclair FH, Stone GN, Nicholls JA, Cavers S, Gibbs M, Butterill G, Wagner S, Ducousso A, Gerber S, Petit R, Kremer A, Schönrogge K, 2016 Impacts of local adaptation of forest trees on associations with herbivorous insects: implications for adaptive forest management. Evolutionary Applications 8: 972-987 (pdf)

2015

Lesur I, Kohler A, Martin F,  Kremer A,  Plomion C,  Le Provost G 2015. Transcriptomic resources for Hazelnut tree (Corylus avellana L.) Genomic Resources Notes  (pdf)

Lesur I, Le Provost G, Bento P, Da Silva C, Leplé JC, Murat F, Ueno S, Bartholomé J, Lalanne C, Ehrenmann F, Noirot C, Burban C, Léger V, Amselemn J, Belser C, Quesneville H, Stierschneider M, Fluch S, Feldhahm L, Tarkka M, Herrmann S, Buscot F, Klopp C, Kremer A, Salse J, Aury JM, Plomion C, 2015 The oak gene expression atlas : insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. BMC Genomics 16: 112 (pdf)

Lepoittevin C, Bodénès C, Chancerel E, Villate L, Lang T, Lesur I, Boury C, Ehrenmann F, Zelenica D, Boland A, Besse C, Garnier‐Géré P, Plomion C, Kremer A 2015, Single-nucleotide polymorphism discovery and validation in high density SNP array for genetic analysis in European white oaks. Mol Ecol Res 15: 1446-1459 (pdf)

Lesur I, Bechade A, Lalanne C, Klopp C,  Noirot C,  Leplé JC,  Kremer A,  Plomion C,  Le Provost G 2015 A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation. Molecular Ecology Resources 15, 1192-1204 (pdf)

Goiecoechea PG., Herran A., Durand J., Bodénès C.,  Plomion Ch., Kremer A., 2015.A linkage disequilibrium perspective on the genetic mosaic of speciation in two hybridizing Mediterranean white oaks. Heredity 114: 373-386 (pdf)

2014

 

Hubert, F. Grimm GW, Jousselin E, Berry V, Franc A, Kremer A  2014 Multiple nuclear genes stabilize the phylogenetic backbone of the genus Quercus. Systematics and Biodiversity 12 : 405-423 (pdf)

Soularue JP, Kremer A (2014) Evolutionary responses of tree phenology to the combined effects of assortative mating, gene flow and divergent selection. Heredity  113:  485-494 (pdf)

Dantec CF, Vitasse Y, Bonhomme M, Louvet JM, Kremer A, Delzon S  2014  Chilling and heat requirements for leaf unfolding in European beech and sessile oak populations at the southern limit of their distribution range. Int J Biometeorol 58:  1853-1864 (pdf)

Kremer A, Potts BM, Delzon S (2014) Genetic divergence in forest trees: understanding the consequences of climate change. Functional Ecology 28 : 22-36  (pdf)

Gerber S., Chadœuf J., Gugerli F., Lascoux M., Buiteveld J., Cottrell J., Dounavi A., Fineschi S., Forrest L., Fogelqvist J., Goicoechea P.G., Jensen J.S., Salvini D., Vendramin G.G., Kremer A. (2014) High rates of gene flow by pollen and seed in oak populations across Europe. PlosOne 9: e85130  (pdf)

2013

 

Gailing O, Bodenes C, Finkledey R, Kremer A, Plomion C (2013) Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family Tree Genetics & Genomes 9: 1361-1367 (pdf)

Alberto FJ, Derory J, Boury C, Frigério JM, Zimmermann NE, Kremer A (2013). Imprints of natural selection along environmental gradients in phenology-related genes of Quercus petraea. Genetics 195 :  495–512 (pdf)

Gugerli F, Brandl R, Castagneyrol B, Franc A, Jactel H, Koelewijn HP, Martin F, Petre M, Pritzch K, Schroder H, Smulder MJM, Kremer A, Ziegenhagen B and Evoltree JERA3 contributors. 2013 Community genetics in the time of next generation molecular technologies. Molecular Ecology 22:  3198–3207 (pdf)

Alberto F, Aitken S, Alia R, Gonzalez-Martinez S, Hanninen H, Kremer A, Lefèvre F, Lenormand T, Yeaman S, Whetten R, Savolainen O  2013 Potential for evolutionary response to climate change - evidence from tree populations. Global Change Biology 19: 1645–1661 (pdf)

Lepais O, Roussel G, Hubert F, Kremer A, Gerber S  2013 Strength and variability of postmating reproductive isolating barriers between four European white oak species Trees Genetics & Genomes 9: 841–853  (pdf)

Homolka A, Schueler S, Burg K, Fluch S, Kremer A 2013 Insights to drought adaptationof two European oak species revealed bu nucleotide diversity of candidate genes. Trees Genetics & Genomes 9: 1179-1192  (pdf)

Ueno S, Klopp C, Leplé JC, Deory D, Noirot C, Prince E, Leger V, Kremer A, Plomion C, and G Le Provost 2013 Trsanscriptional profiling of bud dormancy induction and release in oak by next generations sequencing. BMC Genomics 14: 236 (pdf)

2012

Bodénès C, Chancerel E, Gailing O,  Vendramin GG, Bagnoli F, Durand J, Goicoechea PG, Soliani C, , Villani F, Mattioni C,  Koelewijn HP,  Murat F, Salse J,Roussel G, Boury C, Alberto F, Kremer A, C. Plomion 2012. Comparative mapping in the Fagaceae and beyond using EST-SSRs. BMC Plant Biology 12:153  (pdf)

Castagneyrol B, Lagache L, Giffard B, Kremer A, Jactel H 2012. Genetic diversity increases insect herbivory on oak saplings. Plos One 7: e44247    (pdf)

Kremer A, Baker A, Bousquet J, Cervera MT, Fluch S, Koskela J, Mac Kay JU, neale D, Ritland K, Savolainen O, Vinceti B, Wheeler N, Whitham TG 2012. A roadmap for future transatlantic research cooperation on adaptation of trees to environmental change. Document prepared for the European Commission by the FoResTTrac project.

Lamy JB, PLomion C, Kremer A, Delzon S 2012. QST < FST as a signature of canalization. Molecular Ecology 21 : 5646-5655 (pdf)

Soularue JP, Kremer A (2012) Assortative mating and gene flow generate clinal phenological variation in trees BMC Evolutionary Biology 2012, 12:79  (pdf)

Kremer A, Ronce O, Robledo-Arnuncio JJ, Guillaume F, Bohrer G, Nathan R,  Bridle JR, Gomulkiewicz R, Klein EK, Ritland K, Kuparinen A, Gerber G, Schueler S (2012) Long distance gene flow and adaptation of forest trees to rapid climate change. Ecology Letters 15: 378–392 (pdf)

Le Corre V, Kremer A (2012) The genetic differentiation at quantitative trait loci under local adaptation. Molecular Ecology  21, 1548-1566 (pdf)

Kremer A, Abbott AG, Carlson JE, Manos PS, Plomion C, Sisco P, Staton ME, Ueno S, Vendramin GG (2012) Genomics of Fagaceae. Trees Genetics & Genomes 8, 583-610 (pdf)

Le Provost G, Sulmon C,  Frigério JM, Bodénès C,  Kremer A, Plomion C 2012. The role of water-logging responsive genes in shaping inter-specific differentiation between two sympatric oak species. Tree Physiology  32: 119-134 (pdf)

Kremer A, Le Corre V 2012 Decoupling of differentiation between traits and their underlying genes in response to divergent selection. Heredity. 108, 375–385  (pdf)

Abadie P, Roussel G, Dencausse B, Bonnet C, Bertocchi E,  Louvet JM, Kremer A,  Garnier-Géré P, 2012. Strength, diversity and plasticity of reproductive barriers in two hybridizing oak species (Quercus robur and Quercus petraea (Matt) L.). Journal of Evolutionary Biology 25 : 157-163  (pdf)